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SHARCGS - SHort read Assembler based on Robust Contig extension for Genome Sequencing

Juliane C. Dohm, Claudio Lottaz, and Heinz Himmelbauer

Max Planck Institute for Molecular Genetics
Ihnestr. 63-73, 14195 Berlin, Germany

We present SHARCGS, a DNA assembly program designed for de novo assembly of 25-40mer input fragments and deep sequence coverage. Large numbers of such short reads are generated on advanced sequencing instruments. You find the program, documentation, and a test data set in the download section. The algorithm and result statistics on assemblies of BAC sequences and genomes are described in the SHARCGS publication.


Last modified August 30, 2007 by Juliane Dohm